Package org.rcsb.cif.schema.mm

Class PdbxVirtualBond

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.PdbxVirtualBond
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PdbxVirtualBond
extends DelegatingCategory
Data items in the PDBX_VIRTUAL_BOND category record details about virtual bonds, as calculated from the contents of the ATOM, CELL, and SYMMETRY data.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getModelId

      public IntColumn getModelId()
      The model number for the given bond
      Returns:
      IntColumn

    • getAtomSiteId1

      public StrColumn getAtomSiteId1()
      The identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId1

      public StrColumn getAtomSiteLabelAltId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId1

      public StrColumn getAtomSiteLabelAtomId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId1

      public StrColumn getAtomSiteLabelCompId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId1

      public IntColumn getAtomSiteLabelSeqId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId1

      public StrColumn getAtomSiteLabelAsymId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteId2

      public StrColumn getAtomSiteId2()
      The identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAltId2

      public StrColumn getAtomSiteLabelAltId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_alt_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelAtomId2

      public StrColumn getAtomSiteLabelAtomId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelCompId2

      public StrColumn getAtomSiteLabelCompId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteLabelSeqId2

      public IntColumn getAtomSiteLabelSeqId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAtomSiteLabelAsymId2

      public StrColumn getAtomSiteLabelAsymId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId1

      public StrColumn getAtomSiteAuthAtomId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId1

      public StrColumn getAtomSiteAuthAsymId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId1

      public StrColumn getAtomSiteAuthCompId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId1

      public StrColumn getAtomSiteAuthSeqId1()
      An optional identifier of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAtomId2

      public StrColumn getAtomSiteAuthAtomId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthAsymId2

      public StrColumn getAtomSiteAuthAsymId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthCompId2

      public StrColumn getAtomSiteAuthCompId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAtomSiteAuthSeqId2

      public IntColumn getAtomSiteAuthSeqId2()
      An optional identifier of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getDist

      public FloatColumn getDist()
      The intramolecular bond distance in angstroms.
      Returns:
      FloatColumn

    • getDistEsd

      public FloatColumn getDistEsd()
      The estimated standard deviation of _pdbx_virtual_bond.dist.
      Returns:
      FloatColumn

    • getSiteSymmetry1

      public StrColumn getSiteSymmetry1()
      The symmetry code of the first of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
      Returns:
      StrColumn

    • getSiteSymmetry2

      public StrColumn getSiteSymmetry2()
      The symmetry code of the second of the two atom sites that define the bond specified by _pdbx_virtual_bond.dist.
      Returns:
      StrColumn