Package org.rcsb.cif.schema.mm

Class PhasingMADExpt

java.lang.Object

org.rcsb.cif.schema.DelegatingCategory

org.rcsb.cif.schema.mm.PhasingMADExpt

All Implemented Interfaces:

Category

@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class PhasingMADExpt
extends DelegatingCategory

Data items in the PHASING_MAD_EXPT category record details about a MAD phasing experiment, such as the number of experiments that were clustered together to produce a set of phases or the statistics for those phases.

Nested Class Summary

Nested classes/interfaces inherited from class org.rcsb.cif.schema.DelegatingCategory

DelegatingCategory.DelegatingCifCoreCategory

Nested classes/interfaces inherited from interface org.rcsb.cif.model.Category

Category.EmptyCategory

Field Summary

Fields inherited from class org.rcsb.cif.schema.DelegatingCategory

delegate

Constructor Summary

Constructors

Constructor	Description
PhasingMADExpt(Category delegate)

Method Summary

Modifier and Type	Method	Description
protected Column	createDelegate(String columnName, Column column)
FloatColumn	getDeltaDeltaPhi()	The difference between two independent determinations of _phasing_MAD_expt.delta_phi.
FloatColumn	getDeltaPhi()	The phase difference between F~t~(h), the structure factor due to normal scattering from all atoms, and F~a~(h), the structure factor due to normal scattering from only the anomalous scatterers.
FloatColumn	getDeltaPhiSigma()	The standard uncertainty (estimated standard deviation) of _phasing_MAD_expt.delta_phi.
StrColumn	getId()	The value of _phasing_MAD_expt.id must uniquely identify each record in the PHASING_MAD_EXPT list.
FloatColumn	getMeanFom()	The mean figure of merit.
IntColumn	getNumberClust()	The number of clusters of data sets in this phasing experiment.
FloatColumn	getRNormalAll()	Definition...
FloatColumn	getRNormalAnomScat()	Definition...

Methods inherited from class org.rcsb.cif.schema.DelegatingCategory

getCategoryName, getColumn, getColumns, getRowCount

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface org.rcsb.cif.model.Category

columns, getColumn, isDefined

Constructor Details

PhasingMADExpt

public PhasingMADExpt(Category delegate)

Method Details

createDelegate

protected Column createDelegate(String columnName, Column column)

Overrides:

createDelegate in class DelegatingCategory

getDeltaDeltaPhi

public FloatColumn getDeltaDeltaPhi()

The difference between two independent determinations of _phasing_MAD_expt.delta_phi.

Returns:

FloatColumn

getDeltaPhi

public FloatColumn getDeltaPhi()

The phase difference between F~t~(h), the structure factor due to normal scattering from all atoms, and F~a~(h), the structure factor due to normal scattering from only the anomalous scatterers.

Returns:

FloatColumn

getDeltaPhiSigma

public FloatColumn getDeltaPhiSigma()

The standard uncertainty (estimated standard deviation) of _phasing_MAD_expt.delta_phi.

Returns:

FloatColumn

getId

public StrColumn getId()

The value of _phasing_MAD_expt.id must uniquely identify each record in the PHASING_MAD_EXPT list.

Returns:

StrColumn

getMeanFom

public FloatColumn getMeanFom()

The mean figure of merit.

Returns:

FloatColumn

getNumberClust

public IntColumn getNumberClust()

The number of clusters of data sets in this phasing experiment.

Returns:

IntColumn

getRNormalAll

public FloatColumn getRNormalAll()

Definition...

Returns:

FloatColumn

getRNormalAnomScat

public FloatColumn getRNormalAnomScat()

Definition...

Returns:

FloatColumn