Package org.rcsb.cif.schema.mm

Class StructBiolGen

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.StructBiolGen
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructBiolGen
extends DelegatingCategory
Data items in the STRUCT_BIOL_GEN category record details about the generation of each biological unit. The STRUCT_BIOL_GEN data items provide the specifications of the components that constitute that biological unit, which may include symmetry elements.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAsymId

      public StrColumn getAsymId()
      This data item is a pointer to _struct_asym.id in the STRUCT_ASYM category.
      Returns:
      StrColumn

    • getBiolId

      public StrColumn getBiolId()
      This data item is a pointer to _struct_biol.id in the STRUCT_BIOL category.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the symmetry generation of this portion of the biological structure.
      Returns:
      StrColumn

    • getSymmetry

      public StrColumn getSymmetry()
      Describes the symmetry operation that should be applied to the atom set specified by _struct_biol_gen.asym_id to generate a portion of the biological structure.
      Returns:
      StrColumn

    • getPdbxFullSymmetryOperation

      public StrColumn getPdbxFullSymmetryOperation()
      This item expresses category _struct_biol_gen.symmetry on an X, Y and Z basis.
      Returns:
      StrColumn

    • getPdbxPDBOrder

      public IntColumn getPdbxPDBOrder()
      An ordering index used to reproduce the presentation of chain order in the original PDB format data files.
      Returns:
      IntColumn

    • getPdbxNewAsymId

      public StrColumn getPdbxNewAsymId()
      This category gives the NDB strand ids for the complete biomolecule after it is generated.
      Returns:
      StrColumn

    • getPdbxNewPdbAsymId

      public StrColumn getPdbxNewPdbAsymId()
      This data item is the PDB strand ID of the strand which will be generated.
      Returns:
      StrColumn

    • getPdbxColorRed

      public FloatColumn getPdbxColorRed()
      Gives rgb color code of this strand.
      Returns:
      FloatColumn

    • getPdbxColorGreen

      public FloatColumn getPdbxColorGreen()
      Gives rgb color code of this strand.
      Returns:
      FloatColumn

    • getPdbxColorBlue

      public FloatColumn getPdbxColorBlue()
      Gives rgb color code of this strand.
      Returns:
      FloatColumn

    • getPdbxAfterBeginResidueNo

      public StrColumn getPdbxAfterBeginResidueNo()
      The new residue number after generation of portions of the biomolecule.
      Returns:
      StrColumn

    • getPdbxAfterEndResidueNo

      public StrColumn getPdbxAfterEndResidueNo()
      The new residue number after generation of portions of the biomolecule.
      Returns:
      StrColumn

    • getPdbxBeforeBeginResidueNo

      public StrColumn getPdbxBeforeBeginResidueNo()
      The number of the first residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.
      Returns:
      StrColumn

    • getPdbxBeforeEndResidueNo

      public StrColumn getPdbxBeforeEndResidueNo()
      The number of the last residue to which the symmetry operations have to be applied to generate a portion of the biomolecule.
      Returns:
      StrColumn