Package org.rcsb.cif.schema.mm

Class StructBiolView

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.StructBiolView
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructBiolView
extends DelegatingCategory
Data items in the STRUCT_BIOL_VIEW category record details about how to draw and annotate an informative view of the biological structure.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getBiolId

      public StrColumn getBiolId()
      This data item is a pointer to _struct_biol.id in the STRUCT_BIOL category.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of this view of the biological structure. This data item can be used as a figure legend.
      Returns:
      StrColumn

    • getId

      public StrColumn getId()
      The value of _struct_biol_view.id must uniquely identify a record in the STRUCT_BIOL_VIEW list. Note that this item need not be a number; it can be any unique identifier.
      Returns:
      StrColumn

    • getRotMatrix11

      public FloatColumn getRotMatrix11()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix12

      public FloatColumn getRotMatrix12()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix13

      public FloatColumn getRotMatrix13()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix21

      public FloatColumn getRotMatrix21()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix22

      public FloatColumn getRotMatrix22()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix23

      public FloatColumn getRotMatrix23()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix31

      public FloatColumn getRotMatrix31()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix32

      public FloatColumn getRotMatrix32()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getRotMatrix33

      public FloatColumn getRotMatrix33()
      The elements of the matrix used to rotate the subset of the Cartesian coordinates in the ATOM_SITE category identified in the STRUCT_BIOL_GEN category to give a view useful for describing the structure. The conventions used in the rotation are described in _struct_biol_view.details. |x'| |11 12 13| |x| |y'|~reoriented Cartesian~ = |21 22 23| |y|~Cartesian~ |z'| |31 32 33| |z|
      Returns:
      FloatColumn

    • getPdbxVector1

      public FloatColumn getPdbxVector1()
      translation vector
      Returns:
      FloatColumn

    • getPdbxVector2

      public FloatColumn getPdbxVector2()
      translation vector
      Returns:
      FloatColumn

    • getPdbxVector3

      public FloatColumn getPdbxVector3()
      translation vector
      Returns:
      FloatColumn