Package org.rcsb.cif.schema.mm

Class StructMonProtCis

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.StructMonProtCis
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructMonProtCis
extends DelegatingCategory
Data items in the STRUCT_MON_PROT_CIS category identify monomers that have been found to have the peptide bond in the cis conformation. The criterion used to select residues to be designated as containing cis peptide bonds is given in _struct_mon_details.prot_cis.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getLabelAltId

      public StrColumn getLabelAltId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_sites_alt.id in the ATOM_SITES_ALT category.
      Returns:
      StrColumn

    • getLabelAsymId

      public StrColumn getLabelAsymId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelCompId

      public StrColumn getLabelCompId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getLabelSeqId

      public IntColumn getLabelSeqId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getAuthAsymId

      public StrColumn getAuthAsymId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_asym_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthCompId

      public StrColumn getAuthCompId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_comp_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getAuthSeqId

      public StrColumn getAuthSeqId()
      A component of the identifier for the monomer. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getPdbxAuthAsymId2

      public StrColumn getPdbxAuthAsymId2()
      Pointer to _atom_site.auth_asym_id.
      Returns:
      StrColumn

    • getPdbxAuthCompId2

      public StrColumn getPdbxAuthCompId2()
      Pointer to _atom_site.auth_comp_id.
      Returns:
      StrColumn

    • getPdbxAuthSeqId2

      public StrColumn getPdbxAuthSeqId2()
      Pointer to _atom_site.auth_seq_id
      Returns:
      StrColumn

    • getPdbxLabelAsymId2

      public StrColumn getPdbxLabelAsymId2()
      Pointer to _atom_site.label_asym_id.
      Returns:
      StrColumn

    • getPdbxLabelCompId2

      public StrColumn getPdbxLabelCompId2()
      Pointer to _atom_site.label_comp_id.
      Returns:
      StrColumn

    • getPdbxLabelSeqId2

      public IntColumn getPdbxLabelSeqId2()
      Pointer to _atom_site.label_seq_id
      Returns:
      IntColumn

    • getPdbxPDBInsCode

      public StrColumn getPdbxPDBInsCode()
      Pointer to _atom_site.pdbx_PDB_ins_code
      Returns:
      StrColumn

    • getPdbxPDBInsCode2

      public StrColumn getPdbxPDBInsCode2()
      Pointer to _atom_site.pdbx_PDB_ins_code
      Returns:
      StrColumn

    • getPdbxPDBModelNum

      public IntColumn getPdbxPDBModelNum()
      Pointer to _atom_site.pdbx_PDB_model_num
      Returns:
      IntColumn

    • getPdbxOmegaAngle

      public StrColumn getPdbxOmegaAngle()
      omega torsion angle
      Returns:
      StrColumn

    • getPdbxId

      public StrColumn getPdbxId()
      ordinal index
      Returns:
      StrColumn

    • getPdbxAuthInsCode

      public StrColumn getPdbxAuthInsCode()
      PDB Insertion code
      Returns:
      StrColumn

    • getPdbxAuthInsCode2

      public StrColumn getPdbxAuthInsCode2()
      PDB Insertion code
      Returns:
      StrColumn