Package org.rcsb.cif.schema.mm

Class StructRefSeqDif

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.StructRefSeqDif
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructRefSeqDif
extends DelegatingCategory
Data items in the STRUCT_REF_SEQ_DIF category provide a mechanism for indicating and annotating point differences between the sequence of the entity or biological unit described in the data block and the sequence of the referenced database entry.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getAlignId

      public StrColumn getAlignId()
      This data item is a pointer to _struct_ref_seq.align_id in the STRUCT_REF_SEQ category.
      Returns:
      StrColumn

    • getDbMonId

      public StrColumn getDbMonId()
      The monomer type found at this position in the referenced database entry. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
      Returns:
      StrColumn

    • getDetails

      public StrColumn getDetails()
      A description of special aspects of the point differences between the sequence of the entity or biological unit described in the data block and that in the referenced database entry.
      Returns:
      StrColumn

    • getMonId

      public StrColumn getMonId()
      The monomer type found at this position in the sequence of the entity or biological unit described in this data block. This data item is a pointer to _chem_comp.id in the CHEM_COMP category.
      Returns:
      StrColumn

    • getSeqNum

      public IntColumn getSeqNum()
      This data item is a pointer to _entity_poly_seq.num in the ENTITY_POLY_SEQ category.
      Returns:
      IntColumn

    • getPdbxPdbIdCode

      public StrColumn getPdbxPdbIdCode()
      The PDB ID code.
      Returns:
      StrColumn

    • getPdbxPdbStrandId

      public StrColumn getPdbxPdbStrandId()
      PDB strand/chain id.
      Returns:
      StrColumn

    • getPdbxPdbInsCode

      public StrColumn getPdbxPdbInsCode()
      Insertion code in PDB sequence
      Returns:
      StrColumn

    • getPdbxAuthSeqNum

      public StrColumn getPdbxAuthSeqNum()
      Insertion code in PDB sequence
      Returns:
      StrColumn

    • getPdbxSeqDbName

      public StrColumn getPdbxSeqDbName()
      Sequence database name.
      Returns:
      StrColumn

    • getPdbxSeqDbAccessionCode

      public StrColumn getPdbxSeqDbAccessionCode()
      Sequence database accession number.
      Returns:
      StrColumn

    • getPdbxSeqDbSeqNum

      public StrColumn getPdbxSeqDbSeqNum()
      Sequence database sequence number.
      Returns:
      StrColumn

    • getPdbxOrdinal

      public IntColumn getPdbxOrdinal()
      A synthetic integer primary key for this category.
      Returns:
      IntColumn