Package org.rcsb.cif.schema.mm

Class StructSheetHbond

java.lang.Object
org.rcsb.cif.schema.DelegatingCategory
org.rcsb.cif.schema.mm.StructSheetHbond
All Implemented Interfaces:
Category
@Generated("org.rcsb.cif.schema.generator.SchemaGenerator")
public class StructSheetHbond
extends DelegatingCategory
Data items in the STRUCT_SHEET_HBOND category record details about the hydrogen bonding between residue ranges in a beta- sheet. It is necessary to treat hydrogen bonding independently of the designation of ranges, because the hydrogen bonding may begin in different places for the interactions of a given strand with the one preceding it and the one following it in the sheet.

  • Constructor Details

  • Method Details

    • createDelegate

      protected Column createDelegate​(String columnName, Column column)
      Overrides:
      createDelegate in class DelegatingCategory

    • getRange1BegLabelAtomId

      public StrColumn getRange1BegLabelAtomId()
      A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange1BegLabelSeqId

      public IntColumn getRange1BegLabelSeqId()
      A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getRange1EndLabelAtomId

      public StrColumn getRange1EndLabelAtomId()
      A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange1EndLabelSeqId

      public IntColumn getRange1EndLabelSeqId()
      A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getRange2BegLabelAtomId

      public StrColumn getRange2BegLabelAtomId()
      A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2BegLabelSeqId

      public IntColumn getRange2BegLabelSeqId()
      A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getRange2EndLabelAtomId

      public StrColumn getRange2EndLabelAtomId()
      A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2EndLabelSeqId

      public IntColumn getRange2EndLabelSeqId()
      A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.label_seq_id in the ATOM_SITE category.
      Returns:
      IntColumn

    • getRange1BegAuthAtomId

      public StrColumn getRange1BegAuthAtomId()
      A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange1BegAuthSeqId

      public StrColumn getRange1BegAuthSeqId()
      A component of the identifier for the residue for the first partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange1EndAuthAtomId

      public StrColumn getRange1EndAuthAtomId()
      A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange1EndAuthSeqId

      public StrColumn getRange1EndAuthSeqId()
      A component of the identifier for the residue for the first partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2BegAuthAtomId

      public StrColumn getRange2BegAuthAtomId()
      A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2BegAuthSeqId

      public StrColumn getRange2BegAuthSeqId()
      A component of the identifier for the residue for the second partner of the first hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2EndAuthAtomId

      public StrColumn getRange2EndAuthAtomId()
      A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_atom_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRange2EndAuthSeqId

      public StrColumn getRange2EndAuthSeqId()
      A component of the identifier for the residue for the second partner of the last hydrogen bond between two residue ranges in a sheet. This data item is a pointer to _atom_site.auth_seq_id in the ATOM_SITE category.
      Returns:
      StrColumn

    • getRangeId1

      public StrColumn getRangeId1()
      This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.
      Returns:
      StrColumn

    • getRangeId2

      public StrColumn getRangeId2()
      This data item is a pointer to _struct_sheet_range.id in the STRUCT_SHEET_RANGE category.
      Returns:
      StrColumn

    • getSheetId

      public StrColumn getSheetId()
      This data item is a pointer to _struct_sheet.id in the STRUCT_SHEET category.
      Returns:
      StrColumn

    • getPdbxRange1BegAuthCompId

      public StrColumn getPdbxRange1BegAuthCompId()
      Pointer to _atom_site.auth_comp_id
      Returns:
      StrColumn

    • getPdbxRange1BegAuthAsymId

      public StrColumn getPdbxRange1BegAuthAsymId()
      Pointer to _atom_site.auth_asym_id.
      Returns:
      StrColumn

    • getPdbxRange1EndAuthCompId

      public StrColumn getPdbxRange1EndAuthCompId()
      Pointer to _atom_site.auth_comp_id.
      Returns:
      StrColumn

    • getPdbxRange1EndAuthAsymId

      public StrColumn getPdbxRange1EndAuthAsymId()
      Pointer to _atom_site.auth_comp_id.
      Returns:
      StrColumn

    • getPdbxRange1BegLabelCompId

      public StrColumn getPdbxRange1BegLabelCompId()
      Pointer to _atom_site.label_comp_id
      Returns:
      StrColumn

    • getPdbxRange1BegLabelAsymId

      public StrColumn getPdbxRange1BegLabelAsymId()
      Pointer to _atom_site.label_asym_id.
      Returns:
      StrColumn

    • getPdbxRange1BegPDBInsCode

      public StrColumn getPdbxRange1BegPDBInsCode()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxRange1EndLabelCompId

      public StrColumn getPdbxRange1EndLabelCompId()
      Pointer to _atom_site.label_comp_id.
      Returns:
      StrColumn

    • getPdbxRange1EndLabelAsymId

      public StrColumn getPdbxRange1EndLabelAsymId()
      Pointer to _atom_site.label_asym_id.
      Returns:
      StrColumn

    • getPdbxRange1EndPDBInsCode

      public StrColumn getPdbxRange1EndPDBInsCode()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxRange2BegLabelCompId

      public StrColumn getPdbxRange2BegLabelCompId()
      Pointer to _atom_site.label_comp_id.
      Returns:
      StrColumn

    • getPdbxRange2BegLabelAsymId

      public StrColumn getPdbxRange2BegLabelAsymId()
      Pointer to _atom_site.label_asym_id.
      Returns:
      StrColumn

    • getPdbxRange2BegPDBInsCode

      public StrColumn getPdbxRange2BegPDBInsCode()
      Pointer to _atom_site.pdbx_PDB_ins_code.
      Returns:
      StrColumn

    • getPdbxRange2EndLabelCompId

      public StrColumn getPdbxRange2EndLabelCompId()
      Pointer to _atom_site.label_comp_id.
      Returns:
      StrColumn

    • getPdbxRange2EndLabelAsymId

      public StrColumn getPdbxRange2EndLabelAsymId()
      Pointer to _atom_site.label_asym_id.
      Returns:
      StrColumn

    • getPdbxRange2EndLabelInsCode

      public StrColumn getPdbxRange2EndLabelInsCode()
      Place holder for PDB insertion code.
      Returns:
      StrColumn