org.visallo.vertexium.model.ontology

Class VertexiumOntologyRepository

java.lang.Object

org.visallo.core.model.ontology.OntologyRepositoryBase

org.visallo.vertexium.model.ontology.VertexiumOntologyRepository

All Implemented Interfaces:

OntologyRepository

public class VertexiumOntologyRepository
extends OntologyRepositoryBase

Field Summary

Fields

Modifier and Type	Field and Description
protected com.google.common.cache.Cache<String,List<OntologyProperty>>	allPropertiesCache
static String	ID_PREFIX
static String	ID_PREFIX_CONCEPT
static String	ID_PREFIX_PROPERTY
static String	ID_PREFIX_RELATIONSHIP

Fields inherited from class org.visallo.core.model.ontology.OntologyRepositoryBase

BASE_OWL_IRI, COMMENT_OWL_IRI, RESOURCE_ENTITY_PNG

Fields inherited from interface org.visallo.core.model.ontology.OntologyRepository

CONFIG_INTENT_CONCEPT_PREFIX, CONFIG_INTENT_PROPERTY_PREFIX, CONFIG_INTENT_RELATIONSHIP_PREFIX, ENTITY_CONCEPT_IRI, ROOT_CONCEPT_IRI, TYPE_CONCEPT, TYPE_PROPERTY, TYPE_RELATIONSHIP, VISIBILITY, VISIBILITY_STRING

Constructor Summary

Constructors

Constructor and Description
VertexiumOntologyRepository(org.vertexium.Graph graph, Configuration config, GraphAuthorizationRepository graphAuthorizationRepository, LockRepository lockRepository)

Method Summary

Modifier and Type	Method and Description
protected void	addEntityGlyphIconToEntityConcept(Concept entityConcept, byte[] rawImg)
OntologyProperty	addPropertyTo(List<Concept> concepts, List<Relationship> relationships, String propertyIri, String displayName, org.visallo.web.clientapi.model.PropertyType dataType, Map<String,String> possibleValues, Collection<org.vertexium.TextIndexHint> textIndexHints, boolean userVisible, boolean searchable, boolean addable, boolean sortable, String displayType, String propertyGroup, Double boost, String validationFormula, String displayFormula, com.google.common.collect.ImmutableList<String> dependentPropertyIris, String[] intents, boolean deleteable, boolean updateable)
void	clearCache()
protected Concept	createConcept(org.vertexium.Vertex vertex) Overridable so subclasses can supply a custom implementation of Concept.
protected Concept	createConcept(org.vertexium.Vertex vertex, List<OntologyProperty> conceptProperties, String parentConceptIRI) Overridable so subclasses can supply a custom implementation of Concept.
protected OntologyProperty	createOntologyProperty(org.vertexium.Vertex propertyVertex, com.google.common.collect.ImmutableList<String> dependentPropertyIris) Overridable so subclasses can supply a custom implementation of OntologyProperty.
protected Relationship	createRelationship(String parentIRI, org.vertexium.Vertex relationshipVertex, List<String> inverseOfIRIs, List<String> domainConceptIris, List<String> rangeConceptIris, Collection<OntologyProperty> properties) Overridable so subclasses can supply a custom implementation of Relationship.
protected void	findOrAddEdge(org.vertexium.Vertex fromVertex, org.vertexium.Vertex toVertex, String edgeLabel)
protected org.vertexium.Authorizations	getAuthorizations()
protected List<Concept>	getChildConcepts(Concept concept)
protected List<Relationship>	getChildRelationships(Relationship relationship)
org.visallo.web.clientapi.model.ClientApiOntology	getClientApiObject()
Iterable<Concept>	getConceptsWithProperties()
protected com.google.common.collect.ImmutableList<String>	getDependentPropertyIris(org.vertexium.Vertex vertex)
String	getDisplayNameForLabel(String relationshipIRI)
Concept	getEntityConcept()
protected org.vertexium.Graph	getGraph()
Concept	getOrCreateConcept(Concept parent, String conceptIRI, String displayName, File inDir)
Concept	getOrCreateConcept(Concept parent, String conceptIRI, String displayName, File inDir, boolean isDeclaredInOntology)
protected void	getOrCreateInverseOfRelationship(Relationship fromRelationship, Relationship inverseOfRelationship)
Relationship	getOrCreateRelationshipType(Relationship parent, Iterable<Concept> domainConcepts, Iterable<Concept> rangeConcepts, String relationshipIRI)
Concept	getParentConcept(Concept concept)
Iterable<OntologyProperty>	getProperties()
Iterable<Relationship>	getRelationships()
boolean	hasRelationshipByIRI(String relationshipIRI)
protected void	importOntologyAnnotationProperty(org.semanticweb.owlapi.model.OWLOntology o, org.semanticweb.owlapi.model.OWLAnnotationProperty annotationProperty, File inDir, org.vertexium.Authorizations authorizations)
boolean	isOntologyDefined(String iri)
List<org.semanticweb.owlapi.model.OWLOntology>	loadOntologyFiles(org.semanticweb.owlapi.model.OWLOntologyManager m, org.semanticweb.owlapi.model.OWLOntologyLoaderConfiguration config, org.semanticweb.owlapi.model.IRI excludedIRI)
void	storeOntologyFile(InputStream in, org.semanticweb.owlapi.model.IRI documentIRI)
void	updatePropertyDependentIris(OntologyProperty property, Collection<String> newDependentPropertyIris)
void	updatePropertyDomainIris(OntologyProperty property, Set<String> domainIris)

Methods inherited from class org.visallo.core.model.ontology.OntologyRepositoryBase

addConceptTypeFilterToQuery, addEdgeLabelFilterToQuery, createOwlOntologyManager, definePropertyOnGraph, determineSearchable, findOwlFile, getConceptAndAllChildren, getConceptAndAllChildrenByIri, getConceptByIntent, getConceptByIRI, getConceptIRIByIntent, getConfiguration, getDependentPropertyParent, getOrCreateProperty, getParentConcept, getPropertiesByIntent, getPropertyByIntent, getPropertyByIRI, getPropertyIRIByIntent, getRelationshipAndAllChildren, getRelationshipByIntent, getRelationshipByIRI, getRelationshipIRIByIntent, getRequiredConceptByIntent, getRequiredConceptByIRI, getRequiredConceptIRIByIntent, getRequiredPropertyByIntent, getRequiredPropertyByIRI, getRequiredPropertyIRIByIntent, getRequiredRelationshipByIntent, getRequiredRelationshipIRIByIntent, getRequiredVisalloPropertyByIntent, getVisalloPropertyByIntent, guessDocumentIRIFromFile, guessDocumentIRIFromPackage, importDataProperty, importFile, importFileData, importInverseOf, importObjectProperty, importOntologyAnnotationProperties, importOntologyClass, importResourceOwl, loadOntologies, resolvePropertyIds, setIconProperty, writePackage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

ID_PREFIX

public static final String ID_PREFIX

See Also:

Constant Field Values

ID_PREFIX_PROPERTY

public static final String ID_PREFIX_PROPERTY

See Also:

Constant Field Values

ID_PREFIX_RELATIONSHIP

public static final String ID_PREFIX_RELATIONSHIP

See Also:

Constant Field Values

ID_PREFIX_CONCEPT

public static final String ID_PREFIX_CONCEPT

See Also:

Constant Field Values

allPropertiesCache

protected com.google.common.cache.Cache<String,List<OntologyProperty>> allPropertiesCache

Constructor Detail

VertexiumOntologyRepository

@Inject
public VertexiumOntologyRepository(org.vertexium.Graph graph,
                                           Configuration config,
                                           GraphAuthorizationRepository graphAuthorizationRepository,
                                           LockRepository lockRepository)
                                    throws Exception

Throws:

Exception

Method Detail

importOntologyAnnotationProperty

protected void importOntologyAnnotationProperty(org.semanticweb.owlapi.model.OWLOntology o,
                                                org.semanticweb.owlapi.model.OWLAnnotationProperty annotationProperty,
                                                File inDir,
                                                org.vertexium.Authorizations authorizations)

Overrides:

importOntologyAnnotationProperty in class OntologyRepositoryBase

getClientApiObject

public org.visallo.web.clientapi.model.ClientApiOntology getClientApiObject()

Specified by:

getClientApiObject in interface OntologyRepository

Overrides:

getClientApiObject in class OntologyRepositoryBase

clearCache

public void clearCache()

addEntityGlyphIconToEntityConcept

protected void addEntityGlyphIconToEntityConcept(Concept entityConcept,
                                                 byte[] rawImg)

Specified by:

addEntityGlyphIconToEntityConcept in class OntologyRepositoryBase

storeOntologyFile

public void storeOntologyFile(InputStream in,
                              org.semanticweb.owlapi.model.IRI documentIRI)

Specified by:

storeOntologyFile in class OntologyRepositoryBase

isOntologyDefined

public boolean isOntologyDefined(String iri)

Specified by:

isOntologyDefined in interface OntologyRepository

Specified by:

isOntologyDefined in class OntologyRepositoryBase

loadOntologyFiles

public List<org.semanticweb.owlapi.model.OWLOntology> loadOntologyFiles(org.semanticweb.owlapi.model.OWLOntologyManager m,
                                                                        org.semanticweb.owlapi.model.OWLOntologyLoaderConfiguration config,
                                                                        org.semanticweb.owlapi.model.IRI excludedIRI)
                                                                 throws org.semanticweb.owlapi.model.OWLOntologyCreationException,
                                                                        IOException

Specified by:

loadOntologyFiles in class OntologyRepositoryBase

Throws:

org.semanticweb.owlapi.model.OWLOntologyCreationException

IOException

getRelationships

public Iterable<Relationship> getRelationships()

getDisplayNameForLabel

public String getDisplayNameForLabel(String relationshipIRI)

getProperties

public Iterable<OntologyProperty> getProperties()

getDependentPropertyIris

protected com.google.common.collect.ImmutableList<String> getDependentPropertyIris(org.vertexium.Vertex vertex)

hasRelationshipByIRI

public boolean hasRelationshipByIRI(String relationshipIRI)

getConceptsWithProperties

public Iterable<Concept> getConceptsWithProperties()

getEntityConcept

public Concept getEntityConcept()

getChildConcepts

protected List<Concept> getChildConcepts(Concept concept)

Specified by:

getChildConcepts in class OntologyRepositoryBase

getChildRelationships

protected List<Relationship> getChildRelationships(Relationship relationship)

Specified by:

getChildRelationships in class OntologyRepositoryBase

getParentConcept

public Concept getParentConcept(Concept concept)

getOrCreateConcept

public Concept getOrCreateConcept(Concept parent,
                                  String conceptIRI,
                                  String displayName,
                                  File inDir)

getOrCreateConcept

public Concept getOrCreateConcept(Concept parent,
                                  String conceptIRI,
                                  String displayName,
                                  File inDir,
                                  boolean isDeclaredInOntology)

findOrAddEdge

protected void findOrAddEdge(org.vertexium.Vertex fromVertex,
                             org.vertexium.Vertex toVertex,
                             String edgeLabel)

addPropertyTo

public OntologyProperty addPropertyTo(List<Concept> concepts,
                                      List<Relationship> relationships,
                                      String propertyIri,
                                      String displayName,
                                      org.visallo.web.clientapi.model.PropertyType dataType,
                                      Map<String,String> possibleValues,
                                      Collection<org.vertexium.TextIndexHint> textIndexHints,
                                      boolean userVisible,
                                      boolean searchable,
                                      boolean addable,
                                      boolean sortable,
                                      String displayType,
                                      String propertyGroup,
                                      Double boost,
                                      String validationFormula,
                                      String displayFormula,
                                      com.google.common.collect.ImmutableList<String> dependentPropertyIris,
                                      String[] intents,
                                      boolean deleteable,
                                      boolean updateable)

Specified by:

addPropertyTo in class OntologyRepositoryBase

getOrCreateInverseOfRelationship

protected void getOrCreateInverseOfRelationship(Relationship fromRelationship,
                                                Relationship inverseOfRelationship)

Specified by:

getOrCreateInverseOfRelationship in class OntologyRepositoryBase

getOrCreateRelationshipType

public Relationship getOrCreateRelationshipType(Relationship parent,
                                                Iterable<Concept> domainConcepts,
                                                Iterable<Concept> rangeConcepts,
                                                String relationshipIRI)

updatePropertyDependentIris

public void updatePropertyDependentIris(OntologyProperty property,
                                        Collection<String> newDependentPropertyIris)

updatePropertyDomainIris

public void updatePropertyDomainIris(OntologyProperty property,
                                     Set<String> domainIris)

getAuthorizations

protected org.vertexium.Authorizations getAuthorizations()

getGraph

protected org.vertexium.Graph getGraph()

createOntologyProperty

protected OntologyProperty createOntologyProperty(org.vertexium.Vertex propertyVertex,
                                                  com.google.common.collect.ImmutableList<String> dependentPropertyIris)

Overridable so subclasses can supply a custom implementation of OntologyProperty.

createRelationship

protected Relationship createRelationship(String parentIRI,
                                          org.vertexium.Vertex relationshipVertex,
                                          List<String> inverseOfIRIs,
                                          List<String> domainConceptIris,
                                          List<String> rangeConceptIris,
                                          Collection<OntologyProperty> properties)

Overridable so subclasses can supply a custom implementation of Relationship.

createConcept

protected Concept createConcept(org.vertexium.Vertex vertex,
                                List<OntologyProperty> conceptProperties,
                                String parentConceptIRI)

Overridable so subclasses can supply a custom implementation of Concept.

createConcept

protected Concept createConcept(org.vertexium.Vertex vertex)

Overridable so subclasses can supply a custom implementation of Concept.